Man pages for bomeara/selac
Selection Models for Amino Acid and/or Codon Evolution

GetAdequateManyRepsParallel model adequacy test
GetAdequateSelacModel adequacy simulation
GetFunctionalityCalculate functionality
GetMarginalAllGenesGet marginal reconstruction all genes
GetPartitionOrderGet data partiion order
GetSelacPhiCatPhi rate category information under SELAC+gamma
GetSelacSiteLikelihoodsCalculate site likelihoods under SelAC
internalInternal functions
NucSimulatorSimulate DNA under General-Time Reversible model
SelacHMMOptimizeEfficient optimization of a Hidden Markov SELAC model
SelacOptimizeEfficient optimization of the SELAC model
SelacSimulatorSimulate DNA under the SELAC model
SelacSimulatorEvolvingRatesSimulate DNA under the SELAC model and evolving rates
SelonHMMOptimizeOptimize parameters under the HMM SELON model
SelonOptimizeOptimize parameters under the SELON model
SelonSimulatorSimulate DNA under the SELON model
yeastExample datasets
bomeara/selac documentation built on Feb. 24, 2018, 7:53 p.m.