sis_format_comparison: Get comparison format

In bomeara/sisters: Runs various sister group comparisons to test hypotheses about diversification

Get comparison format

Description

Convert a data.frame of all sister groups (from sis_get_sisters) and a vector of 0 and 1 (with names equal to taxon names) to a data.frame with the sister groups that differ in traits.

Usage

sis_format_comparison(sisters, trait, phy)

Arguments

sisters	Data.frame from sis_get_sisters()
trait	vector of 0/1 data
phy	A phylo object

Value

data.frame where each row is a sister group comparison.

Examples

data(geospiza, package="geiger")
cleaned <- sis_clean(geospiza$phy, geospiza$dat)
phy <- cleaned$phy
traits <- cleaned$traits
trait <- sis_discretize(traits[,1])
sisters <- sis_get_sisters(phy, ncores=2)
sisters_comparison <- sis_format_comparison(sisters, trait, phy)
print(sisters_comparison)

bomeara/sisters documentation built on Oct. 11, 2023, 12:14 a.m.