sis_test: Compute multiple tests based on sister group comparisons

In bomeara/sisters: Runs various sister group comparisons to test hypotheses about diversification

Compute multiple tests based on sister group comparisons

Description

Compute multiple tests based on sister group comparisons

Usage

sis_test(pairs, drop_matches = TRUE, warn = TRUE)

Arguments

pairs	Data.frame with one row per sister group comparison, with one column for number of taxa in state 0, and one column for the number of taxa in state 1.
drop_matches	Drop sister group comparisons with equal numbers of taxa
warn	Some tests will fail with warnings (too few sister groups or other reasons). Setting this to FALSE will suppress those

Value

A vector with the results of many tests, as well as summary data for the comparisons

Examples

data(geospiza, package="geiger")
cleaned <- sis_clean(geospiza$phy, geospiza$dat)
phy <- cleaned$phy
traits <- cleaned$traits
trait <- sis_discretize(traits[,1])
sisters <- sis_get_sisters(phy)
sisters_comparison <- sis_format_comparison(sisters, trait, phy)
pairs <- sis_format_simpified(sisters_comparison)
sis_test(pairs)

bomeara/sisters documentation built on Oct. 11, 2023, 12:14 a.m.