Man pages for bomeara/treevo
Using ABC to Understand Trait Evolution
| boxcoxTransformation | Box-Cox Transformation for Simulation Summary Values |
| compareListIPD | Plot Interparticle Distance between Runs |
| doRun | Run Approximate Bayesian Computation for Phylogenetic... |
| doSimulation | Discrete-Time Character Simulation |
| extrinsicModels | Extrinsic Character Evolution Models |
| getBMRatePrior | Get Brownian Motion Rate Prior |
| highestDensityInterval | Highest Density Interval |
| intrinsicModels | Intrinsic Character Evolution Models |
| landscapeFPK_Intrinsic | Intrinsic Trait Evolution Model for a Macroevolutionary... |
| methodsPLS | Fitting Univariate Partial Least Squares Models to Free... |
| multiOptimaIntrinsic | Single Evolutionary Regime Model with Multiple Optima |
| pairwiseESS | Pairwise Effective Sample Size |
| pairwiseKS | Pairwise Kolmogorov-Smirnov test |
| parentOffspringPlots | Plotting Parent-Offspring Particles |
| plotABC_3D | 3D ABCplots |
| plotPosteriors | Plot posterior distributions |
| plotPriorPost | Plotting, Summarizing and Comparing the Prior and Posterior... |
| simRunExample | Example Analysis Output of a Simulated Dataset |
| simulateWithPriors | Simulate data for initial TreEvo analysis |
| summarizePosterior | Summarize Posterior Distribution for a Free Parameter |
| testMultivarOutlierHDR | Test If an Outlier Is Within a Highest Density Region of a... |
| TreEvo-package | TreEvo-abc for comparative methods |
