parentOffspringPlots: Plotting Parent-Offspring Particles
In bomeara/treevo: Using ABC to Understand Trait Evolution
View source: R/parentOffspringPlots.R
parentOffspringPlots R Documentation
Plotting Parent-Offspring Particles
Description
This function uses the particleDataFrame output by TreEvo ABC analyses and plots
parent-offspring particles from generation to generation.
Usage
parentOffspringPlots(particleDataFrame)
Arguments
particleDataFrame
particleDataFrame output by TreEvo ABC analyses.
Details
Each parameter is plotted twice for parent-offspring relationships through
the generations. In the top row, particles are plotted as a measure of
distance to the observed data; the farther away the particle the bigger the
circle. In the bottom row,
particles are plotted as a measure of their weights; larger circles are
closer to observed data and therefore carry more weight in the analysis.
As of version 0.6.0, rejected particles are not saved for outputting by the parallelized algorithm,
and thus they are no longer displayed by this function.
Value
Creates a set of parent-offspring plots.
Author(s)
Brian O'Meara and Barb Banbury
Examples
data(simRunExample)
parentOffspringPlots(resultsBMExample[[1]]$particleDataFrame)
bomeara/treevo documentation built on Aug. 19, 2023, 6:52 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/parentOffspringPlots.R
| parentOffspringPlots | R Documentation |
Plotting Parent-Offspring Particles
Description
This function uses the particleDataFrame output by TreEvo ABC analyses and plots
parent-offspring particles from generation to generation.
Usage
parentOffspringPlots(particleDataFrame)
Arguments
particleDataFrame |
|
Details
Each parameter is plotted twice for parent-offspring relationships through the generations. In the top row, particles are plotted as a measure of distance to the observed data; the farther away the particle the bigger the circle. In the bottom row, particles are plotted as a measure of their weights; larger circles are closer to observed data and therefore carry more weight in the analysis.
As of version 0.6.0, rejected particles are not saved for outputting by the parallelized algorithm, and thus they are no longer displayed by this function.
Value
Creates a set of parent-offspring plots.
Author(s)
Brian O'Meara and Barb Banbury
Examples
data(simRunExample)
parentOffspringPlots(resultsBMExample[[1]]$particleDataFrame)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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