checkDNA | R Documentation |
This functions counts the number of bases in an alignment that are composed of missing data.
checkDNA(DNAbin, gapsAsMissing = TRUE)
DNAbin |
A DNA alignment of class ‘DNAbin’. |
gapsAsMissing |
Logical. Should gaps (coded as '-') be considered missing bases? Default of TRUE. |
This function considers bases coded as '?' and 'N' as missing data. By default, gaps (coded as '-') are also considered missing.
A numeric vector giving the number of missing bases in each sequence of the alignment.
Samuel Brown <s_d_j_brown@hotmail.com>
data(anoteropsis)
checkDNA(anoteropsis)
checkDNA(anoteropsis, gapsAsMissing=FALSE)
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