This functions counts the number of bases in an alignment that are composed of missing data.
A DNA alignment of class ‘DNAbin’.
Logical. Should gaps (coded as '-') be considered missing bases? Default of TRUE.
This function considers bases coded as '?' and 'N' as missing data. By default, gaps (coded as '-') are also considered missing.
A numeric vector giving the number of missing bases in each sequence of the alignment.
Samuel Brown <[email protected]>
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