seqStat: Sequence statistics
In boopsboops/spider: Species Identity and Evolution in R
seqStat R Documentation
Sequence statistics
Description
Utility that produces a table giving summary statistics for a ‘DNAbin’
object.
Usage
seqStat(DNAbin, thresh = 500)
Arguments
DNAbin
Alignment of class ‘DNAbin’.
thresh
Threshold sequence length. Default of 500 (minimum length for
official DNA barcodes).
Details
This function considers bases coded as '?', 'N' and '-' as missing data.
Value
A table giving the minimum, maximum, mean and median sequence
lengths, and the number of sequences with lengths below the given threshold.
Author(s)
Rupert Collins <rupertcollins@gmail.com>
Examples
data(anoteropsis)
seqStat(anoteropsis)
boopsboops/spider documentation built on June 2, 2025, 7:28 a.m.
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| seqStat | R Documentation |
Sequence statistics
Description
Utility that produces a table giving summary statistics for a ‘DNAbin’ object.
Usage
seqStat(DNAbin, thresh = 500)
Arguments
DNAbin |
Alignment of class ‘DNAbin’. |
thresh |
Threshold sequence length. Default of 500 (minimum length for official DNA barcodes). |
Details
This function considers bases coded as '?', 'N' and '-' as missing data.
Value
A table giving the minimum, maximum, mean and median sequence lengths, and the number of sequences with lengths below the given threshold.
Author(s)
Rupert Collins <rupertcollins@gmail.com>
Examples
data(anoteropsis)
seqStat(anoteropsis)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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