borimifsud/GOTHiC: Binomial test for Hi-C data analysis
This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.
Getting started
Browse package contents
Package details |
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| Author | Borbala Mifsud and Robert Sugar |
| Bioconductor views | Epigenetics HiC ImmunoOncology Preprocessing Sequencing |
| Maintainer | Borbala Mifsud <b.mifsud@qmul.ac.uk> |
| License | GPL-3 |
| Version | 1.25.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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