View source: R/summary.TcGSA.R
summary.TcGSA | R Documentation |
summary
method for class 'TcGSA
'
## S3 method for class 'TcGSA' summary(object, ...) ## S3 method for class 'summary.TcGSA' print(x, ...)
object |
an object of class ' |
... |
further arguments passed to or from other methods. |
x |
an object of class ' |
The function summary.TcGSA returns a list with the following components (list elements):
time_func
the chosen form for the time trend.
separateSubjects
a logical flag indicating whether gene sets
tested for discriminating among patients, or for time trends over time.
ntg
the number of treatment groups.
ngs
the number of tested gene sets.
nsignif
the number of significant gene sets at a 5% FDR (using
the default Benjamini & Yekutieli step-up procedure).
Boris P. Hejblum
TcGSA.LR
if(interactive()){ data(data_simu_TcGSA) tcgsa_sim_1grp <- TcGSA.LR(expr=expr_1grp, gmt=gmt_sim, design=design, subject_name="Patient_ID", time_name="TimePoint", time_func="linear", crossedRandom=FALSE) summary(tcgsa_sim_1grp) tcgsa_sim_2grp <- TcGSA.LR(expr=expr_2grp, gmt=gmt_sim, design=design, subject_name="Patient_ID", time_name="TimePoint", time_func="linear", crossedRandom=FALSE, group_name="group.var") summary(tcgsa_sim_2grp) }
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.