bci_similarity: BCI 50 ha plot taxonomy
In boydorr/BCI: Store for the Barro Colorado Island CTFS dataset
Description
Usage
Format
Details
Source
Examples
Description
A matrix of similarities between species based on their taxonomy. If the
similarity is at a given level, and no higher, then this is the similarity:
Usage
1
Format
A matrix
Details
species_similarity <- 1
genus_similarity <- 0.75
family_similarity <- 0.5
subclass_similarity <- 0.25 # we use "order" instead of "subclass"
other_similarity <- 0
Source
https://repository.si.edu/bitstream/handle/10088/20925/bci.full.Rdata31Aug2012.zip
Examples
1
2
# Show the similarity matrix for the first 3 species
bci_similarity[1:3, 1:3]
boydorr/BCI documentation built on May 23, 2019, 4:24 p.m.
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Description Usage Format Details Source Examples
Description
A matrix of similarities between species based on their taxonomy. If the similarity is at a given level, and no higher, then this is the similarity:
Usage
1 |
Format
A matrix
Details
species_similarity <- 1 genus_similarity <- 0.75 family_similarity <- 0.5 subclass_similarity <- 0.25 # we use "order" instead of "subclass" other_similarity <- 0
Source
https://repository.si.edu/bitstream/handle/10088/20925/bci.full.Rdata31Aug2012.zip
Examples
1 2 | # Show the similarity matrix for the first 3 species
bci_similarity[1:3, 1:3]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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