gen_zmatrix: Generate similarity matrix for a given taxonomy

In boydorr/BCI: Store for the Barro Colorado Island CTFS dataset

Usage

gen_zmatrix(tax = BCI::bci_taxonomy, species = 1, genus = 0.75,
  family = 0.5, order = 0.25, other = 0)

Arguments

tax	The taxonomy to use
species	The similarity value if two rows are the same species
genus	The similarity value if two rows are the same genus but not species
family	The similarity value if two rows are the same family but not genus
order	The similarity value if two rows are the same order but not family
other	The similarity value if two rows are not the same order

Value

A matrix of similarities between species based on their taxonomy.

Examples

# Generate the similarity matrix for the BCI dataset
gen_zmatrix()

boydorr/BCI documentation built on May 23, 2019, 4:24 p.m.