MRIaggr-allocTable: Allocate volumic information

In bozenne/MRIaggr: Management, Display, and Processing of Medical Imaging Data

Description

Allocate volumic information to a MRIaggr object.

Usage

## S4 replacement method for signature 'MRIaggr'
allocTable(object, type, 
         overwrite = FALSE, verbose = optionsMRIaggr("verbose")) <- value

Arguments

object	an object of class MRIaggr. REQUIRED.
value	the volumic information. data.frame. REQUIRED.
type	the type of volumic information. Can be "lesion" "reperfusion" "hypoperfusion". REQUIRED.
overwrite	if tables are already stored in object@normalization, can they be overwritten ? logical.
verbose	should the execution of the function be traced ? logical.

Details

ARGUMENTS :
The validity of the value object is not checked. A valid format should match the result of the calcTableHypoReperf and calcTableLesion functions.

Value

None.

See Also

calcTableHypoReperf to compute the hypoperfusion and reperfusion tables.
calcTableLesion to compute the lesion table.
selectTable to extract the tables.
plotTableLesion to display the lesion volume by slice.

Examples

## load a MRIaggr object
data("MRIaggr.Pat1_red", package = "MRIaggr")

#### 1- lesion ####
## manual allocation
maskN <- c("MASK_DWI_t0","MASK_T2_FLAIR_t2")
resTable <- calcTableLesion(MRIaggr.Pat1_red, maskN = maskN, numeric2logical = TRUE)
allocTable(MRIaggr.Pat1_red, type = "lesion", overwrite = TRUE) <- resTable

## automatic allocation
resTable <- calcTableLesion(MRIaggr.Pat1_red, maskN = maskN,
     numeric2logical = TRUE, update.object = TRUE, overwrite = TRUE)

## display
selectTable(MRIaggr.Pat1_red, type = "lesion")

#### 2- hypoperfusion and reperfusion ####
## manual allocation
resTable <- calcTableHypoReperf(MRIaggr.Pat1_red, param = c("TTP","MTT"), timepoint=c("t0","t1"))
allocTable(MRIaggr.Pat1_red, type = "hypoperfusion", overwrite = TRUE) <- resTable$volume_hypo
allocTable(MRIaggr.Pat1_red, type = "reperfusion", overwrite = TRUE) <- resTable$volume_reperf

## automatic allocation
resTable <- calcTableHypoReperf(MRIaggr.Pat1_red, param = c("TTP","MTT"), 
      timepoint = c("t0","t1"), update.object = TRUE, overwrite = TRUE)

## display
selectTable(MRIaggr.Pat1_red, type = "reperfusion")

bozenne/MRIaggr documentation built on May 13, 2019, 1:39 a.m.