sfMM-simulPotts_cpp: Potts model simulation

Description Usage Arguments

Description

C++ function that simulates an isotropic Potts model by Gibbs sampling. Experimental.

Usage

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simulPotts_cpp(W_SR, W_LR, sample, coords, site_order, rho, 
         distance_ref, iter_max, cv_criterion, regional, verbose)

Arguments

W_SR

the local neighbourhood matrix. dgCMatrix. Should be normalized by row (i.e. rowSums(W_SR)=1).

W_LR

the regional neighbourhood matrix. dgCMatrix. Should contain the categroy of distance.

sample

the initial observations (by rows) for the various groups (by columns). matrix.

coords

the voxels coordinates. matrix.

site_order

a specific order to go all over the sites. An integer vector or a negative number to indicate no specific order.

rho

a numeric corresponding to the Potts model parameter (i.e. intensity of the neighbourhood correlations).

distance_ref

the distance defining the several neighbourhood orders relatively to Wdist_LR. numeric vector.

iter_max

the maximum number of iteration of the Gibbs sampler. integer.

cv_criterion

if the maximum absolute difference of the probabilistic membership between two iterations is below critere then the Gibbs sampler is stopped. numeric.

regional

should the regional potential be computed ?. logical.

verbose

should the convergence criterion be printed at each step ? logical.


bozenne/MRIaggr documentation built on May 13, 2019, 1:39 a.m.