GSet-methods: Gene Set

In bozmik/gseaK: GSEA

Description

GSet

Usage

GSet(gSets, gene_name_ord, ord, n.perm, expr, class, index_ph, stest, abs,
  plot1, plot2, plot3)

## S4 method for signature 'vector,character,vector'
GSet(gSets, gene_name_ord, ord, n.perm,
  expr, class, index_ph, stest, abs, plot1, plot2, plot3)

Arguments

gSets	gene Set
gene_name_ord	ordered gene names
ord	ordered values of statistic
n.perm	number of permutations
expr	expression dataset
class	phenotype data
index_ph	shuffled phenotype labels
stest	Rank metrics
abs	absolute value
plot1	plot1
plot2	plot2
plot3	plot3

Value

returns a vector object

bozmik/gseaK documentation built on May 3, 2019, 2:55 p.m.