gseaK-methods: Gene Set Enrichment Analysis

In bozmik/gseaK: GSEA

Description

GSEA

Usage

gseaK(expr, pheno, gSets, stest = "FC", abs = TRUE, kernel = TRUE,
  n.perm = 1000, correction = TRUE, plot1 = TRUE, plot2 = TRUE,
  plot3 = TRUE)

## S4 method for signature 'data.frame'
gseaK(expr, pheno, gSets, stest = "FC", abs = TRUE,
  kernel = TRUE, n.perm = 1000, correction = TRUE, plot1 = TRUE,
  plot2 = TRUE, plot3 = TRUE)

Arguments

expr	expression data
pheno	phenotype
gSets	Gene Sets
stest	statistical test
abs	absolute value
kernel	Kernal density funcion
n.perm	number of permutations
correction	multiple hypothesis testing
plot1	plot1
plot2	plot2
plot3	plo3

Value

returns a matrix object

bozmik/gseaK documentation built on May 3, 2019, 2:55 p.m.