|analyzeTips||Determines which tips are missing from trees, and how often.|
|generateBootstrapTrees||Generates bootstraps trees based on within-group standard...|
|readAndCombineTrees||Collates a folder of tree files into a single multiPhylo tree...|
|treesToCladeCompare||Calculate in and out distances between and within clades for...|
|trimTreeFromList||Drops a set of tips from a tree.|
|trimTreeToTree||Trims the tips of a target tree A to match the tips of source...|
|withinGroupDistances||Calculate the average distance between groups given a...|
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