foldchange: foldchange Calculate fold change from rpm scaled data.

In brandonsie/bms: Brandon Sie's Personal R Package

foldchange Calculate fold change from rpm scaled data.

Description

foldchange Calculate fold change from rpm scaled data.

Usage

foldchange(rpm_control, rpm_sample, binsize = 300, ignore_cols = c())

Arguments

rpm_control	Reads per million (counts per million) data frame of control data from which to determine bins (e.g. beads only). Peptide order should match that of rpm_sample.
rpm_sample	Reads per million (counts per million) data frame of sample data for which to calculate z-scores. Peptide order should match that of rpm_control
binsize	Number of peptides per bin (default 300)
ignore_cols	Column names to exclude from calculation (e.g. id column)

brandonsie/bms documentation built on Nov. 17, 2023, 11:38 a.m.