new_pro_fun: new_pro_fun
In brandonsie/bms: Brandon Sie's Personal R Package
new_pro_fun R Documentation
new_pro_fun
Description
calculate prosum, promax, pro_breadth – like polyclonal but not redundancy collapsed
Usage
new_pro_fun(
zscore_df,
protein_split,
method = c("sum", "max", "breadth"),
z_thresh = 5
)
Arguments
zscore_df
data frame of zscores
protein_split
character vector ewqual to number of rows in zscore df indicating which peptides belong to which proteins
method
whether to sum values across peptides, max, or take number of peptides above a threshold
z_thresh
threhold above which to count as scoring for method="breadth
brandonsie/bms documentation built on Nov. 17, 2023, 11:38 a.m.
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| new_pro_fun | R Documentation |
new_pro_fun
Description
calculate prosum, promax, pro_breadth – like polyclonal but not redundancy collapsed
Usage
new_pro_fun(
zscore_df,
protein_split,
method = c("sum", "max", "breadth"),
z_thresh = 5
)
Arguments
zscore_df |
data frame of zscores |
protein_split |
character vector ewqual to number of rows in zscore df indicating which peptides belong to which proteins |
method |
whether to sum values across peptides, max, or take number of peptides above a threshold |
z_thresh |
threhold above which to count as scoring for method="breadth |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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