Files in brandonsie/phipmake
PhIP-seq Data Analysis Pipeline
.Rbuildignore
.drake/.gitignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/annotate_data.R
R/check_order.R
R/compute_hits.R
R/define_plan.R
R/emphasize_hit_data.R
R/gather_samples.R
R/getparam.R
R/merge_annotations.R
R/pbar.R
R/phipmake.R
R/polyclonal.R
R/prepare_avarda_names.R
R/prepare_blast_pairs.R
R/promax.R
R/prosum.R
R/read_annot.R
R/read_pairs.R
R/run_epitopefindr.R
R/split_data.R
R/subset_data.R
R/trimDictionary.R
R/u_pep_id_to_libnames.R
R/write_data.R
R/write_drake_params.R
README.md
_pkgdown.yml
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/index.html
docs/articles/larmanguide.html
docs/authors.html
docs/dependency_graph.html
docs/dependency_graph_files/htmlwidgets-1.3/htmlwidgets.js
docs/dependency_graph_files/vis-4.20.1/img/network/acceptDeleteIcon.png
docs/dependency_graph_files/vis-4.20.1/img/network/addNodeIcon.png
docs/dependency_graph_files/vis-4.20.1/img/network/backIcon.png
docs/dependency_graph_files/vis-4.20.1/img/network/connectIcon.png
docs/dependency_graph_files/vis-4.20.1/img/network/cross.png
docs/dependency_graph_files/vis-4.20.1/img/network/cross2.png
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docs/dependency_graph_files/vis-4.20.1/img/network/editIcon.png
docs/dependency_graph_files/vis-4.20.1/img/network/leftArrow.png
docs/dependency_graph_files/vis-4.20.1/img/network/minus.png
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docs/dependency_graph_files/vis-4.20.1/img/network/upArrow.png
docs/dependency_graph_files/vis-4.20.1/img/network/zoomExtends.png
docs/dependency_graph_files/vis-4.20.1/vis.css
docs/dependency_graph_files/vis-4.20.1/vis.min.js
docs/dependency_graph_files/visNetwork-binding-2.0.5/visNetwork.js
docs/docsearch.css
docs/docsearch.js
docs/docsearch.json
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docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/annotate_data.html
docs/reference/check_order.html
docs/reference/compute_hits.html
docs/reference/compute_polycl.html
docs/reference/compute_promax.html
docs/reference/compute_prosum.html
docs/reference/define_plan.html
docs/reference/gather_samples.html
docs/reference/getparam.html
docs/reference/hello.html
docs/reference/independence_filter.html
docs/reference/index.html
docs/reference/library_polycl.html
docs/reference/library_promax.html
docs/reference/library_prosum.html
docs/reference/pbar.html
docs/reference/phipdrake.html
docs/reference/phipmake.html
docs/reference/prepare_avarda_names.html
docs/reference/prepare_blast_pairs.html
docs/reference/protein_polycl.html
docs/reference/protein_promax.html
docs/reference/protein_prosum.html
docs/reference/read_annot.html
docs/reference/read_annot_list.html
docs/reference/read_pairs.html
docs/reference/read_pairs_list.html
docs/reference/split_data.html
docs/reference/subset_data.html
docs/reference/trimDictionary.html
docs/reference/u_pep_id_to_libnames.html
docs/reference/write_data.html
docs/reference/write_drake_params.html
docs/simple_dependency.png
docs/sitemap.xml
logo.svg
man/annotate_data.Rd
man/check_order.Rd
man/compute_hits.Rd
man/compute_polycl.Rd
man/compute_promax.Rd
man/compute_prosum.Rd
man/define_plan.Rd
man/emphasize_hit_data.Rd
man/emphasize_hit_data_list.Rd
man/gather_samples.Rd
man/getparam.Rd
man/independence_filter.Rd
man/library_polycl.Rd
man/library_promax.Rd
man/library_prosum.Rd
man/merge_annotations.Rd
man/pbar.Rd
man/phipmake.Rd
man/prepare_avarda_names.Rd
man/prepare_blast_pairs.Rd
man/protein_polycl.Rd
man/protein_promax.Rd
man/protein_prosum.Rd
man/read_annot.Rd
man/read_annot_list.Rd
man/read_pairs.Rd
man/read_pairs_list.Rd
man/run_epitopefindr.Rd
man/split_data.Rd
man/subset_data.Rd
man/trimDictionary.Rd
man/u_pep_id_to_libnames.Rd
man/write_data.Rd
man/write_drake_params.Rd
phipmake.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/larmanguide.Rmd
