compute_polycl: For multilibrary hits data, identify libraries, and call...

In brandonsie/phipmake: PhIP-seq Data Analysis Pipeline

For multilibrary hits data, identify libraries, and call library_polycl for each.

Description

For multilibrary hits data, identify libraries, and call library_polycl for each.

Usage

compute_polycl(
  data,
  annot,
  pairs,
  method = "independence_filter",
  verbose = TRUE,
  parallel = FALSE
)

Arguments

data	List with first element a character vector of library names and subsequent elements data frames of data for corresponding libraries.
annot	Phiplist of annotation files.
pairs	Phiplist of blast alignment pair files.
method	Character string signifying which scoring method to use for evaluation. independence_filter or old_method.
verbose	Logical whether or not to print progress.
parallel	Logical whether or not to use future and future.apply to parallelize individual library computations.

brandonsie/phipmake documentation built on March 15, 2023, 3:24 p.m.