annotate_data: Add peptide/protein annotation to data file.

In brandonsie/phipmake: PhIP-seq Data Analysis Pipeline

Add peptide/protein annotation to data file.

Description

Add peptide/protein annotation to data file.

Usage

annotate_data(
  data,
  annotations = NULL,
  metadata_path = NULL,
  fields = c("pep_id", "pos_start", "pos_end", "UniProt_acc", "pep_aa", "taxon_genus",
    "taxon_species", "gene_symbol", "product"),
  pep_fields = c("pep_id", "pos_start", "pos_end", "pep_aa"),
  parallel = FALSE
)

Arguments

data	Phiplist of unannotated edata.
annotations	Phiplist of annotation files. Don't use with metadata_path param.
metadata_path	Metadata directory. Don't use with annotations param.
fields	What information to populate from annotation file.
parallel	Logical whether or not to use future and future.apply to parallelize individual library computations.
libname	Library name contained in data.

brandonsie/phipmake documentation built on March 15, 2023, 3:24 p.m.