cystiSim-package: Agent-based model for _Taenia solium_ transmission and...
In brechtdv/cystiSim: Agent-Based Model for Taenia_solium Transmission and Control

Description Details

The cystiSim model allows simulating Taenia solium taeniosis/cysticercosis transmission in a virtual population of humans and pigs. It also allows evaluating the possible effects of human mass drug administration, pig mass drug administration, and pig vaccination. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302 (http://www.cystinet.org/).

Package:	cystiSim
Version:	0.1.2
Date:	2020-02-26
Authors:	Brecht Devleesschauwer, Uffe Christian Braae
Maintainer:	brechtdv@gmail.com
URL:	https://github.com/brechtdv/cystiSim
BugReports:	https://github.com/brechtdv/cystiSim/issues
Depends:	R (>= 3.6.0), ggplot2
Imports:	magrittr, knitr
License:	GPL (>= 2)
LazyLoad:	yes

Available functions in the cystiSim package:

baseline
`random_baseline_man`	Generate a random baseline human population.
`random_baseline_pig`	Generate a random baseline pig population.

model—S3 class '`cystiRun`'
`fit`	Fit parameters of a `cystiRun` model.
`initiate`	Initiate a `cystiRun` model.
`update`	Update a `cystiRun` model.

interventions
`do_man_mda`	Do human mass drug administration.
`do_pig_mda`	Do pig mass drug administration.
`do_pig_vac`	Do pig vaccination.
`do_pig_mda_vac`	Do pig mass drug administration AND vaccination.

simulate—S3 class '`cystiSim`'
`cystiSim`	Simulate multiple `cystiRun` models.
`report`	Generate a PDF report for a `cystiSim` object.
`elim`	Derive when elimination occurred in a `cystiSim` object.