Description Usage Arguments Details Note Author(s)
This function simulates random cystiSim parameters, and return those scenarios that result in a baseline prevalence close to the specified target.
1 2 3 4 |
n.sim |
Desired number of retained scenarios. |
n.update |
Number of updates of the baseline model. |
target |
Named list of target prevalences for |
limit |
Maximum tolerated deviance. |
man |
Human population dataframe. |
pig |
Pig population dataframe. |
ph2m |
Pig (Heavy infection) to Man transmission probability. |
pl2m |
Pig (Light infection) to Man transmission probability. |
m2p |
Man to Pig transmission probability. |
e2p |
Environment to Pig transmission probability. |
age.coef |
Optional intercept and slope for the association between age and taeniosis. |
slaughter |
Function that defines the slaughter probability of pigs. |
slaughter.args |
Arguments to be passed to the slaughter function. |
The abbreviations used:
ht
....Human Taeniosis prevalence
pc
....Porcine Cysticercosis prevalence
pi
....Pig Intensity proportion (i.e., proportion heavily infection pigs)
For more details and examples, please visit the cystiSim Wiki pages on https://github.com/brechtdv/cystiSim/wiki.
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