brendanf/spoar: SIMD Partial Order Alignment in R
SPOA is a C++ library for fast alignment and consensus generation of closely related sequences. It allows local, global, and semi-global (overlap) alignment, using linear, affine, or convex gap penalties, and can also weight by quality scores. SPOAR is an R wrapper for SPOA.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment MultipleSequenceAlignment Software |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.99.3 |
| URL | https://github.com/brendanf/spoar |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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