extract_transcripts: Create a new dataframe of protein features from dataframe...

In brennanpincardiff/drawProteins: Package to Draw Protein Schematics from Uniprot API output

Create a new dataframe of protein features from dataframe with multiple transcripts separated so that each transcript is drawn separtely with only the appropriate features.

Description

This function works on the object returned by the get_features() function. It creates a data.frame of features and includes the accession number AND an order number. It uses the extract_feat_acc function

Usage

extract_transcripts(data)

Arguments

data	Dataframe of one or more rows with the following column names: 'type', 'description', 'begin', 'end', 'length', 'accession', 'entryName', 'taxid', 'order'. Must contain a minimum of one "CHAIN" as data$type.

Value

A dataframe with extra rows if there were multiple transcripts present. Extra transcripts will have an order at the end of the object Each new row should have 9 variables including type, description, begin, end, length, accession, entryName, taxid and order for plotting.

Examples

data(five_rel_data)
new_data <- extract_transcripts(five_rel_data)
# because there are two entries with two transcripts
max(new_data$order) # should now be 7...

brennanpincardiff/drawProteins documentation built on March 8, 2024, 8:15 a.m.