Description Usage Arguments Value Examples
View source: R/cAMARETTO_identifycom.R
cAMARETTO_IdentifyCom
1 2 3 | cAMARETTO_IdentifyCom(cAMARETTOnetworkM, color_list = NULL,
filterComm = TRUE, ratioCommSize = 0.01, MinRuns = 2,
ratioRunSize = 0.1, ratioEdgesInOut = 0.5, plot_network = TRUE)
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cAMARETTOnetworkM |
The output of the Module Network function. |
color_list |
An optional list with colors. |
filterComm |
Boolean to indicate if the identified communities needs to be filtered or not. |
ratioCommSize |
Filter nodes in the community versus nodes out of the community. |
MinRuns |
Filter on minimum number of runs in the community. |
ratioRunSize |
Filter on percentage of runs in the community versus total number of runs. |
ratioEdgesInOut |
Filer on edges in the community versus edges going out. |
plot_network |
If TRUE, plots the Community Network at the end. |
a list with the module network, a community list, community edge information and color list.
1 | cAMARETTOnetworkC<-cAMARETTO_IdentifyCom(cAMARETTOnetworkM,filterComm = FALSE)
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