cAMARETTO_Read: cAMARETTO_Read Reads the AMARETTOinit and AMARETTOresults...
In broadinstitute/ImagingAMARETTO: ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers
Description
Usage
Arguments
Value
Examples
View source: R/cAMARETTO_DataReadDownload.R
Description
cAMARETTO_Read
Reads the AMARETTOinit and AMARETTOresults from (zipped) AMARETTO directories. The names of the list are assigned as run names.
Usage
1
cAMARETTO_Read(AMARETTOdirectories, unzipParentDirectory = getwd())
Arguments
AMARETTOdirectories
a list of AMARETTO directories
unzipParentDirectory
the address where the files are unzipped in
Value
a list with the AMARETTOinit and AMARETTOresults
Examples
1
2
3
4
AMARETTOdirectories <- list(LIHC="AMARETTOresults_20181102_142532.zip",BLCA="AMARETTOresults_20181102_142602.zip",GBM="AMARETTOresults_20181102_142636.zip")
AMARETTO_all <- cAMARETTO_Read(AMARETTOdirectories)
AMARETTOinit_all <- AMARETTO_all$AMARETTOinit_all
AMARETTOresults_all <- AMARETTO_all$AMARETTOresults_all
broadinstitute/ImagingAMARETTO documentation built on Dec. 3, 2019, 6:38 p.m.
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Description Usage Arguments Value Examples
View source: R/cAMARETTO_DataReadDownload.R
Description
cAMARETTO_Read
Reads the AMARETTOinit and AMARETTOresults from (zipped) AMARETTO directories. The names of the list are assigned as run names.
Usage
1 | cAMARETTO_Read(AMARETTOdirectories, unzipParentDirectory = getwd())
|
Arguments
AMARETTOdirectories |
a list of AMARETTO directories |
unzipParentDirectory |
the address where the files are unzipped in |
Value
a list with the AMARETTOinit and AMARETTOresults
Examples
1 2 3 4 | AMARETTOdirectories <- list(LIHC="AMARETTOresults_20181102_142532.zip",BLCA="AMARETTOresults_20181102_142602.zip",GBM="AMARETTOresults_20181102_142636.zip")
AMARETTO_all <- cAMARETTO_Read(AMARETTOdirectories)
AMARETTOinit_all <- AMARETTO_all$AMARETTOinit_all
AMARETTOresults_all <- AMARETTO_all$AMARETTOresults_all
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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