plot_ORFs_in_seq: Find and plot potential ORFs
In brouwern/compbio4all: Datasets and helpful functions for learning bioinformatics and computational biology
Description
Usage
Arguments
Examples
View source: R/plot_ORFs_in_seq.R
Description
By Coghlan (2011) A little book of R for bioinformatics. https://a-little-book-of-r-for-bioinformatics.readthedocs.io/en/latest/.
This function calls find_start_stop_ORFs() thenm builds a plot of the output.
Predictions are based on the standard genetic code.
Usage
1
plot_ORFs_in_seq(sq)
Arguments
sq
DNA sequence
Examples
1
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5
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8
# From Coglan 2011
## Toy example
s1 <- "aaaatgcagtaacccatgccc"
plot_ORFs_in_seq(s1)
## Dengue virus example
data(dengueseqstartstring)
plot_ORFs_in_seq(dengueseqstartstring)
brouwern/compbio4all documentation built on Dec. 19, 2021, 11:47 a.m.
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Description Usage Arguments Examples
View source: R/plot_ORFs_in_seq.R
Description
By Coghlan (2011) A little book of R for bioinformatics. https://a-little-book-of-r-for-bioinformatics.readthedocs.io/en/latest/. This function calls find_start_stop_ORFs() thenm builds a plot of the output. Predictions are based on the standard genetic code.
Usage
1 | plot_ORFs_in_seq(sq)
|
Arguments
sq |
DNA sequence |
Examples
1 2 3 4 5 6 7 8 | # From Coglan 2011
## Toy example
s1 <- "aaaatgcagtaacccatgccc"
plot_ORFs_in_seq(s1)
## Dengue virus example
data(dengueseqstartstring)
plot_ORFs_in_seq(dengueseqstartstring)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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