print_pairwise_alignment: printPairwiseAlignment
In brouwern/compbio4all: Datasets and helpful functions for learning bioinformatics and computational biology

From Coghlan (2011) A little book of R for bioinformatics. https://a-little-book-of-r-for-bioinformatics.readthedocs.io/en/latest/src/chapter4.html

1	print_pairwise_alignment(alignment, chunksize = 60, returnlist = FALSE)

`alignment`	Alignment to print in console
`chunksize`	chunksize
`returnlist`	returnlist

This functions uses Biostrings::pattern() and IRanges::subject() from Bioconductor.

brouwern/compbio4all documentation built on Dec. 19, 2021, 11:47 a.m.

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