rooted_NJ_tree: Wrapper function for creating rooted neighbor-joining trees
In brouwern/compbio4all: Datasets and helpful functions for learning bioinformatics and computational biology
Description
Usage
Arguments
Details
View source: R/rooted_NJ_tree.R
Description
By Avril Coghlan (2011).
Usage
1
rooted_NJ_tree(alignment, og, type)
Arguments
alignment
Multiple sequence alignment object
og
Outgroup, as quoted string
type
Type of sequencE: "DNA" or "protein"
Details
Uses seqinr::dist.alignment() and ape::nj(), ape::boot.phylo().
brouwern/compbio4all documentation built on Dec. 19, 2021, 11:47 a.m.
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Description Usage Arguments Details
View source: R/rooted_NJ_tree.R
Description
By Avril Coghlan (2011).
Usage
1 | rooted_NJ_tree(alignment, og, type)
|
Arguments
alignment |
Multiple sequence alignment object |
og |
Outgroup, as quoted string |
type |
Type of sequencE: "DNA" or "protein" |
Details
Uses seqinr::dist.alignment() and ape::nj(), ape::boot.phylo().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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