Simulating and fitting multiple exposure infectious disease dose-response models

assign_detection_time | Takes a simulated infection time and maps it to an actual... |

calc_censor_likelihood | Calculates the interval censored likelihood when there is... |

calc_current_exposure | Calculates the remaining exposure at given time |

calc_current_exposure_cpp | This is a C++ version of the current remaining exposure... |

calc_risk | Calculate risk from one pathogen exposure |

calc_risk_mult | Calculate risk from mulitple pathogen exposures |

calc_risk_mult_cpp | This is a C++ version of the risk calculation function |

check_exposure_input | Looks at exposure series and exposure times for common errors |

hello | Hello, World! |

likelihood_setup_call | Processes data for and sends data to survival likelihood... |

log_likelihood_fun | Calculates the likelihood of the exposure data |

plot_surv_output | Plots KM from simulations to compare to the data |

rcpp_hello | Hello, Rcpp! |

run_sample_times_simulations | Runs multiple simulations for infection time by ID and given... |

run_simulations | Runs multiple simulations for infection time by ID |

sample_exposure_data | Takes a series of exposures and times and samples from them... |

simulate_infection_sample_times | Simulates infection time for one exposure time series based... |

simulate_infection_times_cpp | This is a C++ version of the simulation function, that will... |

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