thunder_estimate_CTP: Step Two of THUNDER algorithm
In brycerowland/thundeR: thundeR: R-package to run the Two-step Hi-c UNsupervised DEconvolution appRoach
Description
Step Two of THUNDER algorithm
Usage
1
thunder_estimate_CTP(.subset_mixture_path, n_cell_types, itter)
Arguments
n_cell_types
Integer. The number of columns in the basis matrix of the deconvolution. Corresponds to the number of cell types in bulk Hi-C mixture.
itter
Integer. Number of itterations for NMF algorithm. Default is 200.
.subset_mixture
Matrix. Usually the output of 'thunder_feature_selection'
brycerowland/thundeR documentation built on Dec. 14, 2021, 4:59 p.m.
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Description
Step Two of THUNDER algorithm
Usage
1 | thunder_estimate_CTP(.subset_mixture_path, n_cell_types, itter)
|
Arguments
n_cell_types |
Integer. The number of columns in the basis matrix of the deconvolution. Corresponds to the number of cell types in bulk Hi-C mixture. |
itter |
Integer. Number of itterations for NMF algorithm. Default is 200. |
.subset_mixture |
Matrix. Usually the output of 'thunder_feature_selection' |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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