SelectReferenceSetByInterquartileRange: SelectReferenceSetByInterquartileRange

Description Usage Arguments Value Author(s) Examples

View source: R/FolderAnalysis_functions.R

Description

Select a reference set using a factor of the Interquartile Range

Usage

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    SelectReferenceSetByInterquartileRange(allSamplesReadCounts,
                                  	   normalizationMethod = "tmm",
                                           iqrFactor = 1)

Arguments

allSamplesReadCounts

All samples read counts matrix

normalizationMethod

tmm (trimmed mean of m values) or tss (total sum scaling)

iqrFactor

Interquantile range factor

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

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    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  iqrFactor = 1)
    

budczies/CNVPanelizer documentation built on Nov. 20, 2018, 12:24 a.m.