SelectReferenceSetByKmeans: SelectReferenceSetByKmeans
In budczies/CNVPanelizer: Reliable CNV detection in targeted sequencing applications
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Select a reference set using Kmeans
Usage
1
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3
SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
Arguments
allSamplesReadCounts
All samples read counts matrix
normalizationMethod
tmm (trimmed mean of m values) or tss (total sum scaling)
referenceNumberOfElements
Number of elements to select for the reference set
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1
2
3
4
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SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
budczies/CNVPanelizer documentation built on May 29, 2019, 1:41 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Select a reference set using Kmeans
Usage
1 2 3 | SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
|
Arguments
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
referenceNumberOfElements |
Number of elements to select for the reference set |
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1 2 3 4 5 6 |
SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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