tidy_rarefy: Rarefy Long Data
In bulksoil/tidyMB: A Set of Tools for Tidy Microbiome Analysis
Description
Usage
Arguments
Value
Examples
Description
This function is a wrapper around Vegan's capscale function for performing PCoA on tidy (long) data.
Usage
1
2
tidy_rarefy(x, rare_depth = NULL, samples = "SampleID", otus = "variable",
value = "value")
Arguments
rare_depth
The sampling depth for rarefaction. Defaults to the minimum sample depth if no value is provided
samples
The column header for your sample identifiers. Defaults to SampleID
otus
The column header for your OTU identifiers. Defaults to variable
value
The column header for the OTU abundances. Defaults to RA
Value
A list containing the axes, the eigenvalues, and loadings (optional)
Examples
1
bulksoil/tidyMB documentation built on May 29, 2019, 2:27 p.m.
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Description Usage Arguments Value Examples
Description
This function is a wrapper around Vegan's capscale function for performing PCoA on tidy (long) data.
Usage
1 2 | tidy_rarefy(x, rare_depth = NULL, samples = "SampleID", otus = "variable",
value = "value")
|
Arguments
rare_depth |
The sampling depth for rarefaction. Defaults to the minimum sample depth if no value is provided |
samples |
The column header for your sample identifiers. Defaults to SampleID |
otus |
The column header for your OTU identifiers. Defaults to variable |
value |
The column header for the OTU abundances. Defaults to RA |
Value
A list containing the axes, the eigenvalues, and loadings (optional)
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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