wide_distance: Convert long data to wide distance
In bulksoil/tidyMB: A Set of Tools for Tidy Microbiome Analysis
Description
Usage
Arguments
Value
Examples
Description
This function is a wrapper around Vegan's adonis function for performing PERMANOVA on tidy (long) data.
Usage
1
2
wide_distance(x, samples = "SampleID", otus = "variable", value = "RA",
dist = "bray")
Arguments
samples
The column header for your sample identifiers. Defaults to SampleID
otus
The column header for your OTU identifiers. Defaults to variable
value
The column header for the OTU abundances. Defaults to RA
dist
The distance metric options from vegan's vegdist(). Defaults to bray
Value
S3 adonis object
Examples
1
bulksoil/tidyMB documentation built on May 29, 2019, 2:27 p.m.
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Description Usage Arguments Value Examples
Description
This function is a wrapper around Vegan's adonis function for performing PERMANOVA on tidy (long) data.
Usage
1 2 | wide_distance(x, samples = "SampleID", otus = "variable", value = "RA",
dist = "bray")
|
Arguments
samples |
The column header for your sample identifiers. Defaults to SampleID |
otus |
The column header for your OTU identifiers. Defaults to variable |
value |
The column header for the OTU abundances. Defaults to RA |
dist |
The distance metric options from vegan's vegdist(). Defaults to bray |
Value
S3 adonis object
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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