tests/testthat/test_and.R

#### eventlog ####

test_that("test and on eventlog", {

  load("./testdata/patients.rda")

  and <- patients %>%
    filter(!(patient == "Jane Doe" & activity == "check-out")) %>%
    check_rule(and("check-in", "check-out"))

  expect_s3_class(and, "eventlog")

  expect_equal(dim(and), c(nrow(patients) - 1, ncol(patients) + 1))
  expect_equal(colnames(and), c(colnames(patients), "and_check_in_check_out"))

  # Jane Doe lacks "check-out".
  # George Doe lacks both "check-in" and "check-out", so rule is satisfied.
  expect_true(all(and[and$patient != "Jane Doe",]$and_check_in_check_out))
  expect_false(any(and[and$patient == "Jane Doe",]$and_check_in_check_out))
})

test_that("test and on eventlog fails on non-existing activity", {

  load("./testdata/patients.rda")

  expect_error(
    and <- patients %>%
      check_rule(and("blood sample", "administer medication")),
    "*Activity blood sample not found in log*")

  expect_error(
    and <- patients %>%
      check_rule(and("check-in", "administer medication")),
    "*Activity administer medication not found in log*")
})

test_that("test and on grouped_eventlog", {

  load("./testdata/patients_grouped_resource.rda")

  and <- patients_grouped_resource %>%
    filter(!(patient == "Jane Doe" & activity == "check-out")) %>%
    check_rule(and("check-in", "check-out"))

  expect_s3_class(and, "grouped_eventlog")

  expect_equal(dim(and), c(nrow(patients_grouped_resource) - 1, ncol(patients_grouped_resource) + 1))
  expect_true(compare::compareIgnoreOrder(colnames(and), c(colnames(patients_grouped_resource), "and_check_in_check_out"))$result)
  expect_equal(groups(and), groups(patients_grouped_resource))

  # Jane Doe lacks "check-out".
  # George Doe lacks both "check-in" and "check-out", so rule is satisfied.
  expect_true(all(and[and$patient != "Jane Doe",]$and_check_in_check_out))
  expect_false(any(and[and$patient == "Jane Doe",]$and_check_in_check_out))
})

#### activitylog ####

test_that("test and on activitylog", {

  load("./testdata/patients_act.rda")

  and <- patients_act %>%
    filter(!(patient == "Jane Doe" & activity == "check-out")) %>%
    check_rule(and("check-in", "check-out"))

  expect_s3_class(and, "activitylog")

  expect_equal(dim(and), c(nrow(patients_act) - 1, ncol(patients_act) + 1))
  expect_equal(colnames(and), c(colnames(patients_act), "and_check_in_check_out"))

  # Jane Doe lacks "check-out", George Doe lacks both "check-in" and "check-out" (result = TRUE).
  expect_true(all(and[and$patient != "Jane Doe",]$and_check_in_check_out))
  expect_false(any(and[and$patient == "Jane Doe",]$and_check_in_check_out))
})

test_that("test and on grouped_activitylog", {

  load("./testdata/patients_act_grouped_resource.rda")

  and <- patients_act_grouped_resource %>%
    filter(!(patient == "Jane Doe" & activity == "check-out")) %>%
    check_rule(and("check-in", "check-out"))

  expect_s3_class(and, "grouped_activitylog")

  expect_equal(dim(and), c(nrow(patients_act_grouped_resource) - 1, ncol(patients_act_grouped_resource) + 1))
  expect_true(compare::compareIgnoreOrder(colnames(and), c(colnames(patients_act_grouped_resource), "and_check_in_check_out"))$result)
  expect_equal(groups(and), groups(patients_act_grouped_resource))

  # Jane Doe lacks "check-out".
  # George Doe lacks both "check-in" and "check-out", so rule is satisfied.
  expect_true(all(and[and$patient != "Jane Doe",]$and_check_in_check_out))
  expect_false(any(and[and$patient == "Jane Doe",]$and_check_in_check_out))
})
bupaverse/processcheckR documentation built on Oct. 8, 2022, 2:23 a.m.