buriom/denoiSeq: Differential Expression Analysis Using a Bottom-Up Model
Version 0.1.1

Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), , and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.

Getting started

Package details

Maintainer
LicenseGPL-2
Version0.1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("buriom/denoiSeq")
buriom/denoiSeq documentation built on Jan. 24, 2018, 3:59 a.m.