Man pages for bwrc/colibri
Platform for automating analyses of physiological time series in R.

add_blockAdd a new block to the block structure in a recording,...
add_segment_timestamp[deprecated] Add timestamps to the segments in the results...
adjust_indicesAdjust two vectors with indices so that these form pairs of...
analyse_frequencydomainFrequency-domain HRV analysis.
analyse_frequencydomain_helperHelper function for frequency-domain HRV analysis.
analyse_geometricGeometric HRV analysis.
analyse_geometric_helperHelper function for geometric HRV analysis.
analyse_nonlinearNonelinear HRV analysis.
analyse_nonlinear_helperHelper function for nonlinear HRV analysis.
analyse_timedomainTime-domain HRV analysis.
analyse_timedomain_helperHelper function for time-domain HRV analysis.
analysis_pipeline_ibiCalculate results.
analyze_blockAnalyze results in a block.
analyze_recordingAnalyze a recording.
analyze_recording_collectionAnalyze all recordings in a recording collection.
block_to_secondsReturn a block structure where any timestamps have been...
colibriPlatform for automating analyses of physiological time series...
collect_resultsCollect results.
collect_results_collectionCollect the results from all recordings in a recording...
create_block_simpleCreate a simple block.
create_block_structureCreate an empty block structure.
cut_recordingCut a recording to the given time interval, given as...
cut_recordingsCut the recordings in a collection so that they represent the...
cut_recording_sCut the given recording to the time interval ts, given in...
cut_recordings_sCut the recordings in a collection so that they represent the...
defactorConvert a factor to a string or numeric representation.
detect_artifacts_xuArtifact detection from interbeat interval (IBI) time series.
ensure_pathEnsure that a directory path exists. If the given path does...
extract_segmentExtract a segment of a signal corresponding to the given...
extract_segment_blockExtract the segment of a signal corresponding to the given...
extract_segment_sExtract a segment of a signal corresponding to the given...
extract_segment_timestampExtract a segment of a signal corresponding to the given...
find_recording_overlapGiven a recording collection, find the overlapping times of...
generate_result_rowGenerate a result row to be used as a template for the...
generate_segmentsGenerate analysis segments given a start and stop time.
generate_segments_from_blockGenerate analysis segments given a block.
get_file_extensionGet the file extension.
get_filename_partsSeparate the filename and the file extenions
hr_from_ibiAdd a time series with the instantaneous heart rate to a...
ibi_band_customCalculate the power in custom HRV frequency bands.
ibi_band_standardCalculate the power in the standard HRV frequency bands (VLF,...
ibi_entropyCalculate entropy of the IBI series
ibi_from_ecgGiven an ECG signal, form the IBI series
ibi_maxCalculate the maximum of interbeat intervals or heart rate....
ibi_meanCalculate the average of interbeat intervals or heart rate....
ibi_medianCalculate the median of interbeat intervals or heart rate....
ibi_minCalculate the minimum of interbeat intervals or heart rate....
ibi_nnxCalculate the NNx value.
ibi_pnnxCalculate the NNx value.
ibi_pnnx_helperHelper function for calculating the pNNx value.
ibi_rmssdCalculate the root-mean squared of successive differences...
ibi_sd1Determine the SD1 metric from a Poincare plot.
ibi_sd2Determine the SD2 metric from a Poincare plot.
ibi_stdevCalculate the standard deviation of interbeat intervals or...
ibi_tinnDetermine the HRV Triangular Interpolation Index (TINN) as...
ibi_triangular_indexDetermine the HRV Triangular index as defined in HRV...
ibi_varCalculate the variance of interbeat intervals.
integrate_powerIntegrate using the trapezoid rule
load_recordingLoad a recording
lombscargleLomb-Scargle Periodogram estimation
moving_averageCalculate the moving average of a vector.
new_recordingReturn and initialise an empty recording structure. The...
num_to_timestampConvert a numeric value to a timestamp Assumes the numeric...
plot_all_blocksPlot signal data and also show block limits and tasks types...
plot_artifactsVisualize artifacts in IBI time series.
plot_blockPlot the signal data in a measurement block.
plot_check_rr_detectionCheck the quality of R-peak detection.
plot_ecg_r_peakProduce a multipage PDF file with plots showing the entire...
plot_metricPlot a metric.
plot_poincareProduce a Poincare plot.
plot_spectrumPlot the HRV frequency spectrum.
qrs_detectR-peak detection
qrs_interpolateImprove the identification of the R-peak using cubic spline...
read.block.event.dataRead block information from a file or from a database and...
read.configRead the measurement configuration from a file.
read.config.excelRead the measurement configuration from an Excel file.
read.config.sqliteRead the measurement configuration from an SQLite 3 database.
read.dataGeneric function for reading data.
read.data.edfRead data in the European Data Format.
read.data.firstbeatRead data in the Firstbeat Data Format
read.data.ibiRead data in generic IBI format with one IBI in milliseconds...
read.data.suuntoRead data in the Suunto Data Format
read.dbtable.excelRead blocks or events from an Excel file.
read.dbtable.sqliteRead blocks or events from an sqlite database.
recording_get_zerotimeGet the zerotime of the recording, i.e., the timestamp that...
recording_set_blocksStore the block information inside the recording structure
recording_set_events#' Store the event information inside the recording structure
recording_set_ibiStore the interbeat interval data series in the recording...
recording_set_zerotimeSet the zerotime of the recording, i.e., the timestamp that...
remove_ibi_artifactsAutomatically detect and remove artifacts.
replicate_df_rowReplicate a row in a data frame N times returning a new data...
save_recordingSave a recording
seconds_to_indicesGet the indices corresponding to the times t0 and t1 given in...
settings_template_hrvTemplate for analysis settings.
set_tz_to_utcSet the timezone of a given 'POSIXct' timestamp to UTC.
shade_frequency_bandShade the area under the power spectrum corresponding to a...
str_to_timestampConvert a string to a timestamp
timeintervals_to_secondsConvert a time interval defined by two timestamps to seconds...
timestamp_to_secondsConvert a timestamp to seconds from the start of the...
timestamp_to_strConvert a timestamp to a string
bwrc/colibri documentation built on May 13, 2019, 9:10 a.m.