settings_template_hrv: Template for analysis settings.
In bwrc/colibri: Platform for automating analyses of physiological time series in R.

Return a list of lists, containing default analysis settings.

1	settings_template_hrv()

A list with default analysis settings.

$timedomain$metric.list: A list of the time domain HRV metrics that should be analyzed. The default is c("mean", "meanhr", "rmssd", "var", "stdev", "pnnx")
$timedomain$parameters$pnnx: A list indicating which pNNx values should be analysed. The default is c(50), so that the pNN50 is analyzed.

$frequencydomain$metric.list: A list of the frequency domain metrics that should be analyzed. The default is c("standard") and if some custom bands are added, this must be set to c("standard", "custom").

$frequencydomain$parameters$band.names.standard.prefix: String used to prefix the standard VLF, LF and HF bands. Default is c("")
$frequencydomain$parameters$band.vlf: VLF band limits. Default is c(0.00, 0.04)
$frequencydomain$parameters$band.lf: LF band limits. Default is c(0.04, 0.15)
$frequencydomain$parameters$band.hf: HF band limits. Default is c(0.15, 0.40)

$frequencydomain$parameters$band.names.custom: A list of names with the custom frequency bands. E.g. c("custom1", "custom2")
$frequencydomain$parameters$band.lower: Lower limits for the custom frequency bands, in order, e.g., c(0.1, 0.2)
$frequencydomain$parameters$band.upper: Upper limits for the custom frequency bands, in order, e.g., c(0.3, 0.5)

$frequencydomain$parameters$f.limits: A list giving the upper and lower limits for frequency estimation. The default is c(0, 0.4)
$frequencydomain$parameters$demean: Boolean indicating whether the spectrum should be demeaned. Default is TRUE.
$frequencydomain$parameters$normalization: The type of spectrum normalization to be use. Possible values are 'variance' and 'none' (default).
$frequencydomain$parameters$smooth: Boolean indicating whether the spectrum should be smoothed. Default is FALSE.
$frequencydomain$parameters$kernel: String giving the smoothing kernel. Default is "daniell".
$frequencydomain$parameters$smooth.degree: Degree of smoothing. Default is 5.
$frequencydomain$parameters$ofac: Lomb-Scargle oversampling factor.
$frequencydomain$parameters$hifac: Lomb-Scargle hifac. Frequencies are estimated up until hifac * average sampling frequency.

$geometric$metric.list: A list of geometric metrics. Default is c("sd1", "sd2", "triangular.index", "tinn").
$geometric$triangular.index$binwidth: Bin width for the triangular index. Default is 128.
$geometric$tinn$binwidth: Bin width for the TINN metric. Default is 128.

$nonlinear$metric.list: A list of nonlinear metrics. Default is c("sampen", "apen") for both Sample Entropy and Approximate Entropy.
$geometric$embedding_dimension: The embedding dimension. Default is 2.

bwrc/colibri documentation built on May 13, 2019, 9:10 a.m.