generate: Generate graph data for examples

In byandell/qdg: QTL directed graphs

Description

Generate data for individual examples. These are utility routines to

illustrate the examples. They are not meant for users per se.

Usage

generate.data(cross, bp, bq, stdev, allqtl)
generate.data.graph.a(cross, burnin, bq, bp, stdev, geno)
generate.data.graph.b(cross, burnin, bq, bp, stdev, geno)
generate.data.graph.c(cross, burnin, bq, bp, stdev, geno)
generate.data.2or3(cross, bp, bq, stdev, allqtl)
produce.qtl.sample(cross, n.phe, nqtl = 3)

Arguments

cross	object of class cross; see read.cross
bp	vector or matrix of coefficients for dependencies between phenotypes; see cyclic and acyclic examples
bq	vector or matrix of coefficients for QTL effects on phenotypes; see cyclic and acyclic examples
stdev	vector of standard deviations per phenotype
allqtl	list of objects of class qtl produced by produce.qtl.sample
burnin	number of burnin cycles for MCMC; default is 2000
geno	genotypes at markers, typically extracted with pull.geno
n.phe	number of phenotypes
nqtl	number of QTL

See Also

acyclic, cyclica, cyclicb, cyclicc

Examples

## Not run: 
example(acyclic)
example(cyclica)
example(cyclicb)
example(cyclicc)

## End(Not run)

byandell/qdg documentation built on May 13, 2019, 9:28 a.m.