init: Examine low-level C routines for QTL calculations.

In byandell/qtlbcsft: Tools for testing QTL BCsFt calculations

Description

BC1F0 is a backcross, and BC0F2 is an intercross. The BCsFt calculations are compared for the low-level C routines used in R/qtl.

Usage

bcsft.init(s = 1, t = 0)
bcsft.step(rf = 0.5, s = 0, t = 2)
bcsft.nrec(rf = 0.5, s = 0, t = 2)
bcsft.rf(rf = 0.5, s = 0, t = 2)

Arguments

rf	Recombination frequence (between 0 and 0.5).
s	Number of backcross generations.
t	Number of intercross generations. If s = 0, then t must be at least 2, as F1 is zero-th generation for all experimental crosses.

Author(s)

Brian S. Yandell <[e-mail]> and Laura Shannon.

Examples

bcsft.init(s = 1, t = 0)
bcsft.step(rf = 0.5, s = 0, t = 2)
bcsft.nrec(rf = 0.5, s = 0, t = 2)
bcsft.rf(rf = 0.5, s = 0, t = 2)

byandell/qtlbcsft documentation built on May 13, 2019, 9:52 a.m.