| add.phenos | Create genetic and physical list of maps object. |
| annotation | Create trait.annotation object |
| aug.scanone | Plot 1-D scan of LOD and/or means |
| bestscan | Make 1-D scans from best patterns |
| build36 | NCBI build 36 data for Affymetrix 5K Mouse Kit |
| cistrans | Create and plot cis-trans map |
| complod | Composite LOD plot across multiple groups |
| maps | Create genetic and physical list of maps object. |
| multtrait | Plot 1-D scan of LOD and/or means |
| mygeno.image | image of genotypes |
| myplot | Plot 1-D scan of LOD and/or means |
| perms | Create list of scanone perm objects. |
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