complod: Composite LOD plot across multiple groups

In byandell/qtlview: Visualization of QTL Scans for Multiple Traits

Description

Run multtrait and composite LOD on a single plot.

Usage

listof.complod(file.groups, dir = NULL, scan.type = "LOD", ...)
## S3 method for class 'listof.complod'
plot(x, lodcolumn = 1, ylim, ylab,
  col, lty, pre.main = "", main, ...)

Arguments

file.groups	Vector of character strings with file names to be used for multtrait.
dir	~~Describe dir here~~
scan.type	Scan type: LOD and LPD use support.lod in ylab.
x	Object of class listof.complod created by listof.complod.
lodcolumn	Value 1 or 2 corresponding to composite LOD or (if present) support interval.
ylim,ylab,col,lty	Plot arguments
pre.main	Prefix for default main label
main	Main label: default has pre.main followed by color legend.
...	Additional arguments for routines called.

Details

This is a kludge. Current use is to use the web page for multtrait to create the text files, then use those files again, manually, to create a combined plot. Text files are saved in http://attie.wisc.edu/lab/data/data_for_intranet/r_scripts.

Author(s)

Brian S. Yandell

See Also

multtrait

Examples

## Not run: 
## Extract data for multtrait as tab-delimited files.
## Now merge the plots.
tmp <- listof.complod(c(a="scana.txt", b="scanb.txt"))
plot(tmp)

## End(Not run)

byandell/qtlview documentation built on May 13, 2019, 9:53 a.m.