data.md

Word Health Organization (WHO) Tuberculosis case notifications by country

The data is called tb_cases.

Description

See source for description of the data. tb_dictionary describes the column names.

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:---------------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |iso_numeric |character |NA | |g_whoregion |character |NA | |year |numeric |NA | |new_sp |numeric |NA | |new_sn |numeric |NA | |new_su |numeric |NA | |new_ep |numeric |NA | |new_oth |numeric |NA | |ret_rel |numeric |NA | |ret_taf |numeric |NA | |ret_tad |numeric |NA | |ret_oth |numeric |NA | |newret_oth |numeric |NA | |new_labconf |numeric |NA | |new_clindx |numeric |NA | |ret_rel_labconf |numeric |NA | |ret_rel_clindx |numeric |NA | |ret_rel_ep |numeric |NA | |ret_nrel |numeric |NA | |notif_foreign |numeric |NA | |c_newinc |numeric |NA | |new_sp_m04 |numeric |NA | |new_sp_m514 |numeric |NA | |new_sp_m014 |numeric |NA | |new_sp_m1524 |numeric |NA | |new_sp_m2534 |numeric |NA | |new_sp_m3544 |numeric |NA | |new_sp_m4554 |numeric |NA | |new_sp_m5564 |numeric |NA | |new_sp_m65 |numeric |NA | |new_sp_mu |numeric |NA | |new_sp_f04 |numeric |NA | |new_sp_f514 |numeric |NA | |new_sp_f014 |numeric |NA | |new_sp_f1524 |numeric |NA | |new_sp_f2534 |numeric |NA | |new_sp_f3544 |numeric |NA | |new_sp_f4554 |numeric |NA | |new_sp_f5564 |numeric |NA | |new_sp_f65 |numeric |NA | |new_sp_fu |numeric |NA | |new_sn_m04 |numeric |NA | |new_sn_m514 |numeric |NA | |new_sn_m014 |numeric |NA | |new_sn_m1524 |numeric |NA | |new_sn_m2534 |numeric |NA | |new_sn_m3544 |numeric |NA | |new_sn_m4554 |numeric |NA | |new_sn_m5564 |numeric |NA | |new_sn_m65 |numeric |NA | |new_sn_m15plus |numeric |NA | |new_sn_mu |numeric |NA | |new_sn_f04 |numeric |NA | |new_sn_f514 |numeric |NA | |new_sn_f014 |numeric |NA | |new_sn_f1524 |numeric |NA | |new_sn_f2534 |numeric |NA | |new_sn_f3544 |numeric |NA | |new_sn_f4554 |numeric |NA | |new_sn_f5564 |numeric |NA | |new_sn_f65 |numeric |NA | |new_sn_f15plus |numeric |NA | |new_sn_fu |numeric |NA | |new_sn_sexunk04 |logical |NA | |new_sn_sexunk514 |logical |NA | |new_sn_sexunk014 |logical |NA | |new_sn_sexunk15plus |logical |NA | |new_ep_m04 |logical |NA | |new_ep_m514 |numeric |NA | |new_ep_m014 |numeric |NA | |new_ep_m1524 |numeric |NA | |new_ep_m2534 |numeric |NA | |new_ep_m3544 |numeric |NA | |new_ep_m4554 |numeric |NA | |new_ep_m5564 |numeric |NA | |new_ep_m65 |numeric |NA | |new_ep_m15plus |numeric |NA | |new_ep_mu |numeric |NA | |new_ep_f04 |numeric |NA | |new_ep_f514 |numeric |NA | |new_ep_f014 |numeric |NA | |new_ep_f1524 |numeric |NA | |new_ep_f2534 |numeric |NA | |new_ep_f3544 |numeric |NA | |new_ep_f4554 |numeric |NA | |new_ep_f5564 |numeric |NA | |new_ep_f65 |numeric |NA | |new_ep_f15plus |numeric |NA | |new_ep_fu |numeric |NA | |new_ep_sexunk04 |numeric |NA | |new_ep_sexunk514 |numeric |NA | |new_ep_sexunk014 |numeric |NA | |new_ep_sexunk15plus |numeric |NA | |new_ep_sexunkageunk |logical |NA | |rel_in_agesex_flg |numeric |NA | |newrel_m04 |numeric |NA | |newrel_m514 |numeric |NA | |newrel_m014 |numeric |NA | |newrel_m1524 |numeric |NA | |newrel_m2534 |numeric |NA | |newrel_m3544 |numeric |NA | |newrel_m4554 |numeric |NA | |newrel_m5564 |numeric |NA | |newrel_m65 |numeric |NA | |newrel_m15plus |numeric |NA | |newrel_mu |numeric |NA | |newrel_f04 |numeric |NA | |newrel_f514 |numeric |NA | |newrel_f014 |numeric |NA | |newrel_f1524 |numeric |NA | |newrel_f2534 |numeric |NA | |newrel_f3544 |numeric |NA | |newrel_f4554 |numeric |NA | |newrel_f5564 |numeric |NA | |newrel_f65 |numeric |NA | |newrel_f15plus |numeric |NA | |newrel_fu |numeric |NA | |newrel_sexunk04 |numeric |NA | |newrel_sexunk514 |numeric |NA | |newrel_sexunk014 |numeric |NA | |newrel_sexunk15plus |numeric |NA | |newrel_sexunkageunk |numeric |NA | |rdx_data_available |numeric |NA | |newinc_rdx |numeric |NA | |rdxsurvey_newinc |logical |NA | |rdxsurvey_newinc_rdx |logical |NA | |rdst_new |numeric |NA | |rdst_ret |numeric |NA | |rdst_unk |numeric |NA | |conf_rrmdr |numeric |NA | |conf_mdr |numeric |NA | |rr_sldst |numeric |NA | |all_conf_xdr |numeric |NA | |unconf_rrmdr_tx |numeric |NA | |conf_rrmdr_tx |numeric |NA | |unconf_mdr_tx |numeric |NA | |conf_mdr_tx |numeric |NA | |conf_xdr_tx |numeric |NA | |mdrxdr_bdq_used |numeric |NA | |mdrxdr_bdq_tx |numeric |NA | |mdrxdr_dlm_used |numeric |NA | |mdrxdr_dlm_tx |numeric |NA | |mdr_shortreg_used |numeric |NA | |mdr_shortreg_tx |numeric |NA | |mdr_tx_adverse_events |numeric |NA | |mdr_tx_adsm |numeric |NA | |newrel_tbhiv_flg |numeric |NA | |newrel_hivtest |numeric |NA | |newrel_hivpos |numeric |NA | |newrel_art |numeric |NA | |hivtest |numeric |NA | |hivtest_pos |numeric |NA | |hiv_cpt |numeric |NA | |hiv_art |numeric |NA | |hiv_tbscr |numeric |NA | |hiv_reg |numeric |NA | |hiv_ipt |numeric |NA | |hiv_reg_new |numeric |NA | |hiv_ipt_reg_all |numeric |NA | |hiv_reg_all |numeric |NA | |hiv_tbdetect |numeric |NA | |hiv_reg_new2 |numeric |NA |

Word Health Organization (WHO) Tuberculosis budgets by country

The data is called tb_budget.

Description

See source for description of the data. tb_dictionary describes the column names.

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:---------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |iso_numeric |character |NA | |g_whoregion |character |NA | |year |numeric |NA | |tx_dstb |numeric |NA | |budget_cpp_dstb |numeric |NA | |tx_mdr |numeric |NA | |budget_cpp_mdr |numeric |NA | |tx_xdr |numeric |NA | |budget_cpp_xdr |numeric |NA | |budget_lab |numeric |NA | |cf_lab |numeric |NA | |budget_staff |numeric |NA | |cf_staff |numeric |NA | |budget_fld |numeric |NA | |cf_fld |numeric |NA | |budget_prog |numeric |NA | |cf_prog |numeric |NA | |budget_sld |numeric |NA | |cf_sld |numeric |NA | |budget_mdrmgt |numeric |NA | |cf_mdrmgt |numeric |NA | |budget_tbhiv |numeric |NA | |cf_tbhiv |numeric |NA | |budget_patsup |numeric |NA | |cf_patsup |numeric |NA | |budget_orsrvy |numeric |NA | |cf_orsrvy |numeric |NA | |budget_oth |numeric |NA | |cf_oth |numeric |NA | |budget_tot |numeric |NA | |cf_tot |numeric |NA | |cf_tot_domestic |numeric |NA | |cf_tot_gf |numeric |NA | |cf_tot_usaid |numeric |NA | |cf_tot_grnt |numeric |NA | |cf_tot_sources |numeric |NA |

Word Health Organization (WHO) Tuberculosis expenditures and utilization by country

The data is called tb_utilization.

Description

See source for description of the data. tb_dictionary describes the column names.

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:-----------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |iso_numeric |character |NA | |g_whoregion |character |NA | |year |numeric |NA | |exp_cpp_dstb |numeric |NA | |exp_cpp_mdr |numeric |NA | |exp_cpp_xdr |numeric |NA | |exp_lab |numeric |NA | |rcvd_lab |numeric |NA | |exp_staff |numeric |NA | |rcvd_staff |numeric |NA | |exp_fld |numeric |NA | |rcvd_fld |numeric |NA | |exp_prog |numeric |NA | |rcvd_prog |numeric |NA | |exp_sld |numeric |NA | |rcvd_sld |numeric |NA | |exp_mdrmgt |numeric |NA | |rcvd_mdrmgt |numeric |NA | |exp_tbhiv |numeric |NA | |rcvd_tbhiv |numeric |NA | |exp_patsup |numeric |NA | |rcvd_patsup |numeric |NA | |exp_orsrvy |numeric |NA | |rcvd_orsrvy |numeric |NA | |exp_oth |numeric |NA | |rcvd_oth |numeric |NA | |exp_tot |numeric |NA | |rcvd_tot |numeric |NA | |rcvd_tot_domestic |numeric |NA | |rcvd_tot_gf |numeric |NA | |rcvd_tot_usaid |numeric |NA | |rcvd_tot_grnt |numeric |NA | |rcvd_tot_sources |numeric |NA | |hcfvisit_dstb |numeric |NA | |hcfvisit_mdr |numeric |NA | |hospd_dstb_prct |numeric |NA | |hospd_mdr_prct |numeric |NA | |hospd_dstb_dur |numeric |NA | |hospd_mdr_dur |numeric |NA | |hosp_type_mdr |numeric |NA |

Word Health Organization (WHO) Tuberculosis treatment outcomes by country

The data is called tb_outcomes.

Description

See source for description of the data. tb_dictionary describes the column names.

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:------------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |iso_numeric |character |NA | |g_whoregion |character |NA | |year |numeric |NA | |rep_meth |numeric |NA | |new_sp_coh |numeric |NA | |new_sp_cur |numeric |NA | |new_sp_cmplt |numeric |NA | |new_sp_died |numeric |NA | |new_sp_fail |numeric |NA | |new_sp_def |numeric |NA | |c_new_sp_tsr |numeric |NA | |new_snep_coh |numeric |NA | |new_snep_cmplt |numeric |NA | |new_snep_died |numeric |NA | |new_snep_fail |numeric |NA | |new_snep_def |numeric |NA | |c_new_snep_tsr |numeric |NA | |ret_coh |numeric |NA | |ret_cur |numeric |NA | |ret_cmplt |numeric |NA | |ret_died |numeric |NA | |ret_fail |numeric |NA | |ret_def |numeric |NA | |hiv_new_sp_coh |numeric |NA | |hiv_new_sp_cur |numeric |NA | |hiv_new_sp_cmplt |numeric |NA | |hiv_new_sp_died |numeric |NA | |hiv_new_sp_fail |numeric |NA | |hiv_new_sp_def |numeric |NA | |hiv_new_snep_coh |numeric |NA | |hiv_new_snep_cmplt |numeric |NA | |hiv_new_snep_died |numeric |NA | |hiv_new_snep_fail |numeric |NA | |hiv_new_snep_def |numeric |NA | |hiv_ret_coh |numeric |NA | |hiv_ret_cur |numeric |NA | |hiv_ret_cmplt |numeric |NA | |hiv_ret_died |numeric |NA | |hiv_ret_fail |numeric |NA | |hiv_ret_def |numeric |NA | |rel_with_new_flg |numeric |NA | |newrel_coh |numeric |NA | |newrel_succ |numeric |NA | |newrel_fail |numeric |NA | |newrel_died |numeric |NA | |newrel_lost |numeric |NA | |c_new_tsr |numeric |NA | |ret_nrel_coh |numeric |NA | |ret_nrel_succ |numeric |NA | |ret_nrel_fail |numeric |NA | |ret_nrel_died |numeric |NA | |ret_nrel_lost |numeric |NA | |c_ret_tsr |numeric |NA | |tbhiv_coh |numeric |NA | |tbhiv_succ |numeric |NA | |tbhiv_fail |numeric |NA | |tbhiv_died |numeric |NA | |tbhiv_lost |numeric |NA | |c_tbhiv_tsr |numeric |NA | |mdr_coh |numeric |NA | |mdr_succ |numeric |NA | |mdr_fail |numeric |NA | |mdr_died |numeric |NA | |mdr_lost |numeric |NA | |xdr_coh |numeric |NA | |xdr_succ |numeric |NA | |xdr_fail |numeric |NA | |xdr_died |numeric |NA | |xdr_lost |numeric |NA |

Word Health Organization (WHO) Tuberculosis csv file column names

The data is called tb_dictionary.

Description

File found at https://extranet.who.int/tme/generateCSV.asp?ds=dictionary

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:-------------|:---------|:-----------| |variable_name |character |NA | |dataset |character |NA | |code_list |character |NA | |definition |character |NA |

Word Health Organization (WHO) Tuberculosis csv file column names

The data is called tb_estimates.

Description

File found at https://extranet.who.int/tme/generateCSV.asp?ds=dictionary

The source of this data is < https://www.who.int/tb/country/data/download/en/ >

Data format

A data frame with columns:

|variable |class |description | |:------------------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |iso_numeric |character |NA | |g_whoregion |character |NA | |year |numeric |NA | |e_pop_num |numeric |NA | |e_inc_100k |numeric |NA | |e_inc_100k_lo |numeric |NA | |e_inc_100k_hi |numeric |NA | |e_inc_num |numeric |NA | |e_inc_num_lo |numeric |NA | |e_inc_num_hi |numeric |NA | |e_tbhiv_prct |numeric |NA | |e_tbhiv_prct_lo |numeric |NA | |e_tbhiv_prct_hi |numeric |NA | |e_inc_tbhiv_100k |numeric |NA | |e_inc_tbhiv_100k_lo |numeric |NA | |e_inc_tbhiv_100k_hi |numeric |NA | |e_inc_tbhiv_num |numeric |NA | |e_inc_tbhiv_num_lo |numeric |NA | |e_inc_tbhiv_num_hi |numeric |NA | |e_mort_exc_tbhiv_100k |numeric |NA | |e_mort_exc_tbhiv_100k_lo |numeric |NA | |e_mort_exc_tbhiv_100k_hi |numeric |NA | |e_mort_exc_tbhiv_num |numeric |NA | |e_mort_exc_tbhiv_num_lo |numeric |NA | |e_mort_exc_tbhiv_num_hi |numeric |NA | |e_mort_tbhiv_100k |numeric |NA | |e_mort_tbhiv_100k_lo |numeric |NA | |e_mort_tbhiv_100k_hi |numeric |NA | |e_mort_tbhiv_num |numeric |NA | |e_mort_tbhiv_num_lo |numeric |NA | |e_mort_tbhiv_num_hi |numeric |NA | |e_mort_100k |numeric |NA | |e_mort_100k_lo |numeric |NA | |e_mort_100k_hi |numeric |NA | |e_mort_num |numeric |NA | |e_mort_num_lo |numeric |NA | |e_mort_num_hi |numeric |NA | |cfr |numeric |NA | |cfr_lo |numeric |NA | |cfr_hi |numeric |NA | |cfr_pct |numeric |NA | |cfr_pct_lo |numeric |NA | |cfr_pct_hi |numeric |NA | |c_newinc_100k |numeric |NA | |c_cdr |numeric |NA | |c_cdr_lo |numeric |NA | |c_cdr_hi |numeric |NA |

Word Health Organization (WHO) Tuberculosis as found in the R for Data Science Book

The data is called tb_rfds.

Description

See the tidy data chapter https://r4ds.had.co.nz/tidy-data.html

The source of this data is < https://tidyr.tidyverse.org/reference/who.html >

Data format

A data frame with columns:

|variable |class |description | |:------------|:---------|:-----------| |country |character |NA | |iso2 |character |NA | |iso3 |character |NA | |year |integer |NA | |new_sp_m014 |integer |NA | |new_sp_m1524 |integer |NA | |new_sp_m2534 |integer |NA | |new_sp_m3544 |integer |NA | |new_sp_m4554 |integer |NA | |new_sp_m5564 |integer |NA | |new_sp_m65 |integer |NA | |new_sp_f014 |integer |NA | |new_sp_f1524 |integer |NA | |new_sp_f2534 |integer |NA | |new_sp_f3544 |integer |NA | |new_sp_f4554 |integer |NA | |new_sp_f5564 |integer |NA | |new_sp_f65 |integer |NA | |new_sn_m014 |integer |NA | |new_sn_m1524 |integer |NA | |new_sn_m2534 |integer |NA | |new_sn_m3544 |integer |NA | |new_sn_m4554 |integer |NA | |new_sn_m5564 |integer |NA | |new_sn_m65 |integer |NA | |new_sn_f014 |integer |NA | |new_sn_f1524 |integer |NA | |new_sn_f2534 |integer |NA | |new_sn_f3544 |integer |NA | |new_sn_f4554 |integer |NA | |new_sn_f5564 |integer |NA | |new_sn_f65 |integer |NA | |new_ep_m014 |integer |NA | |new_ep_m1524 |integer |NA | |new_ep_m2534 |integer |NA | |new_ep_m3544 |integer |NA | |new_ep_m4554 |integer |NA | |new_ep_m5564 |integer |NA | |new_ep_m65 |integer |NA | |new_ep_f014 |integer |NA | |new_ep_f1524 |integer |NA | |new_ep_f2534 |integer |NA | |new_ep_f3544 |integer |NA | |new_ep_f4554 |integer |NA | |new_ep_f5564 |integer |NA | |new_ep_f65 |integer |NA | |newrel_m014 |integer |NA | |newrel_m1524 |integer |NA | |newrel_m2534 |integer |NA | |newrel_m3544 |integer |NA | |newrel_m4554 |integer |NA | |newrel_m5564 |integer |NA | |newrel_m65 |integer |NA | |newrel_f014 |integer |NA | |newrel_f1524 |integer |NA | |newrel_f2534 |integer |NA | |newrel_f3544 |integer |NA | |newrel_f4554 |integer |NA | |newrel_f5564 |integer |NA | |newrel_f65 |integer |NA |



byuidatascience/data4tuberculosis documentation built on Dec. 10, 2020, 8:22 p.m.