Files in byzhang23/TreeCorTreat
Tree-based correlation screen for phenotype-associated transcriptomic features and cell types
DESCRIPTION
LICENSE
NAMESPACE
R/access_data_seurat.R
R/cancor_permute.R
R/construct_pseudobulk.R
R/ctprop_cancor.R
R/expr_cancor.R
R/extract_PC.R
R/extract_hrchy_seurat.R
R/extract_hrchy_string.R
R/integrated_cellmeta.R
R/modify_label.R
R/raw_data.R
R/select_hvgs.R
R/treecor_celldensityplot.R
R/treecor_ctprop.R
R/treecor_deg.R
R/treecor_degheatmap.R
R/treecor_expr.R
R/treecor_harmony.R
R/treecor_samplepcaplot.R
R/treecortreatplot.R
README.md
data/integrated_cellmeta.rda
data/raw_data.rda
docs/DataPreparation.Rmd
docs/DataPreparation.html
docs/Gene_Expression.csv
docs/GeneralizedTreeCorTreatPlot.Rmd
docs/GeneralizedTreeCorTreatPlot.html
docs/SampleMeta.csv
docs/TreeCorTreat.Rmd
docs/TreeCorTreat.html
docs/index.html
docs/multisample/Sample1.csv
docs/multisample/Sample2.csv
docs/multisample/Sample3.csv
docs/multisample/Sample4.csv
man/access_data_seurat.Rd
man/cancor_permute.Rd
man/construct_pseudobulk.Rd
man/ctprop_cancor.Rd
man/expr_cancor.Rd
man/extract_PC.Rd
man/extract_hrchy_seurat.Rd
man/extract_hrchy_string.Rd
man/integrated_cellmeta.Rd
man/modify_label.Rd
man/raw_data.Rd
man/select_hvgs.Rd
man/treecor_celldensityplot.Rd
man/treecor_ctprop.Rd
man/treecor_deg.Rd
man/treecor_degheatmap.Rd
man/treecor_expr.Rd
man/treecor_harmony.Rd
man/treecor_samplepcaplot.Rd
man/treecortreatplot.Rd
