raw_data: Raw data for TreeCorTreat package

In byzhang23/TreeCorTreat: Tree-based correlation screen for phenotype-associated transcriptomic features and cell types

Raw data for TreeCorTreat package

Description

Processed single-cell RNA-seq data downloaded from ArrayExpress: E-MTAB-9357. It includes 8 PMBC samples, 4 healthy donors and 4 severe COVID-19 patients.

Usage

data(raw_data)

Format

A list that contains three elements: sample-level metadata, cell-level metadata and gene expression matrix (raw count)

Source

ArrayExpress

References

Su Y, Chen D, Yuan D, et al. Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19. Cell. 2020;183(6):1479-1495.e20. doi:10.1016/j.cell.2020.10.037. (PubMed)

Examples

data(raw_data)

byzhang23/TreeCorTreat documentation built on May 7, 2024, 8:37 a.m.