modify_label: Modify label for tree nodes

In byzhang23/TreeCorTreat: Tree-based correlation screen for phenotype-associated transcriptomic features and cell types

Modify label for tree nodes

Description

Rename the node labels

Usage

modify_label(new_label, hierarchy_list, cell_meta, verbose = T)

Arguments

new_label	A data frame specifying old and new names for each node. Must contain two columns named as 'old' (corresponds to old celltype name) and 'new' (corresponds to new celltype name).
hierarchy_list	A hierarchy list by running extract_hrchy_string() or extract_hrchy_seurat() functions, which contains four elements: 'edges', 'layout', 'immediate_children' and 'leaves_info'.
cell_meta	Cell-level metadata, where each row is a cell. Must contain these columns: barcode, celltype and sample.
verbose	Show progress

Value

A list that contains modified hierarchy_list and/or cell_meta

Author(s)

Boyang Zhang <[e-mail]>, Hongkai Ji

byzhang23/TreeCorTreat documentation built on May 7, 2024, 8:37 a.m.