brtPlotNoise: brtPlotNoise

View source: R/visulize.R

brtPlotNoiseR Documentation

brtPlotNoise

Description

brtPlotNoise

Usage

brtPlotNoise(
  obj,
  feature,
  background = NULL,
  threshold = 3,
  signal = "Neurons"
)

Arguments

obj

an brtstarter object, the idents of coldata should contain Neurons and at least one non-neuronal ident.

feature

bc or a name of numeric column of coldata. bc will override bc column if bc column exist.

background

a character vector, describe which non-neuronal cluster used to calculate the threshold. Using all non-neuronal groups if none is provided.

threshold

a numeric value, default to be 3


c57bl/Brt documentation built on May 20, 2022, 8:45 p.m.