README.md

In c5sire/BSgenome.phix174.NCBI.NC001422: Coliphage Phi-X174 Complete Genome

BSgenome.phix174.NCBI.NC001422

The goal of BSgenome.phix174.NCBI.NC001422 is to provide a small reference genome for testing purposes.

Installation

You can install the released version of BSgenome.phix174.NCBI.NC001422 with:

install.packages("remotes")
remotes::install_github("c5sire/BSgenome.phix174.NCBI.NC001422", 
  dependencies = TRUE)

Usage

suppressPackageStartupMessages(
  library(BSgenome.phix174.NCBI.NC001422)
)


phix174 <- BSgenome.phix174.NCBI.NC001422
phix174
#> phi-X174 genome:
#> # organism: Escherichia virus phiX174 (phi-X174)
#> # provider: NCBI
#> # provider version: NC_001422.1
#> # release date: Jul 2018
#> # release name: NCBI Reference Sequence: NC_001422.1
#> # 1 sequences:
#> #   NC_001422.1                                                            
#> # (use 'seqnames()' to see all the sequence names, use the '$' or '[[' operator
#> # to access a given sequence)

dna <- phix174$NC_001422.1
dna
#>   5386-letter "DNAString" instance
#> seq: GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACT...CGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA

c5sire/BSgenome.phix174.NCBI.NC001422 documentation built on Feb. 28, 2020, 12:22 a.m.